Genomics Data Carpentry Workshop

Helmholtz HIDA

22-25 February 2022

9:00-13:00 CET

Instructors: Annajiat Alim Rasel, Horacio Vargas Guzman

Helpers: Sophia Buehrig

General Information

Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Its target audience is researchers who have little to no prior computational experience, and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly apply skills learned to their own research. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.

For more information on what we teach and why, please see our paper "Good Enough Practices for Scientific Computing".

Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop.

Where: Online at https://helmholtz-de.zoom.us/j/82753233068?pwd=a3pJM1NtUlAwL0hyZHlweUszZ3NvUT09
Event page is at https://events.hifis.net/event/274/ .

When: 22-25 February 2022. Add to your Google Calendar.

Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. You should have an up-to-date web browser installed on your computers, as well as a spreadsheet program (e.g. Excel). For Windows, you will also need to install either Git Bash, PuTTY, or the Ubuntu Subsystem. For more information see "Setup" below. The remaining programs that we will use are going to be on the Amazon Machine Image (AMI) instance which will be provided for you.

Accessibility: We are committed to making this workshop accessible to everybody. For workshops at a physical location, the workshop organizers have checked that:

Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.

Contact: Please email sophia.buehrig@helmholtz.de , annajiat@gmail.com or horacio.v.g@gmail.com for more information.

Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.


Code of Conduct

Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.


Collaborative Notes

We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.


Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey


Schedule


Setup

To participate in a Data Carpentry workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

The setup instructions for the Data Carpentry Genomics workshops can be found at the workshop overview site

.